Category : singularity-container

I work in neuroscience, and I use a cloud platform called Brainlife to upload and download data (linked here, but I don’t think knowledge of Brainlife is relevant to this question). I use Brainlife’s command line interface to upload and download data on my university’s server. In order to use their CLI, I run Singularity ..

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How to pull a docker image from github registry using singularity? Usually with docker you have to generate a token and run sth similar to: docker pull docker.pkg.github.com/{etc}/{etc}/{etc} –username {mygithubusername} –password {generatedtoken} However, singularity pull docker://docker.pkg.github.com/{etc}/{etc}/{etc} –username {mygithubusername} –password {generatedtoken} produces: Error for command "pull": accepts between 1 and 2 arg(s), received 5 Source: Docker ..

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I am working under a university’s HPC system, which has only singularity installed and without docker. I want to run an already singularity-pulled docker image (julia_adfem_v1.sif). The original command for the docker environment is docker run -ti kailaix/adcme . What’s it for singularity? I have tried something like singularity exec ./julia_adfem_v1.sif kailaix/adcme but not sucessful. ..

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