I am changing node.js 8.9.4 project dockerfile to node 14. But it stack at install r-base, and r-base-dev. The Dockerfile is below: # node version dependent on meteor version #FROM node:8.9.4 # I am going to use 12.22.2 FROM node:14 WORKDIR /usr/src/app # (even if copied as root you still need to change) # https://github.com/moby/moby/issues/6119 ..
Category : r
For a daily report Rmarkdown script that I would like to encapsulate in a docker container I face a problem with a plotly plot that is created from ggplot facet_grid and then transformed using ggplotly. When I run the script locally on R studio my plot is working as intended: When I run the script ..
I am currently in the process of bringing my R-Shiny app online. Unfortunately, I am not getting anywhere with my current approach (EKS Cluster + Shinyproxy) (see question: "ERR_EMPTY_RESPONSE" – ShinyApp hosted over AWS (EC2 / EKS / ShinyProxy) does not work). Therefore, I have considered taking the (supposedly) easier route via Fargate. But I ..
I run my own OSRM server and use OSRM R package. OSRM server run but when I want to get osrmTable I get this error: The OSRM server returned an error: Error in doTryCatch(return(expr), name, parentenv, handler): object ‘res’ not found and my code is this: get_OSRMTable = osrmTable(route,osrm.server = "http://0.0.0.0:5000/",osrm.profile = ("car"), measure = ..
Hi have created dockerfile(multi-stage) for python and R. But the size was nearly 1.95GB. Initially it was 2.45GB, after using multi-stage it is reduces to 1.95GB. But still I’m looking for optimization. Dockerfile: FROM tiangolo/uvicorn-gunicorn-fastapi:python3.8-slim-2021-06-09 As stage1 COPY key_gnupg.gpg /app/key_gnupg.gpg RUN echo "Acquire::Check-Valid-Until "false";nAcquire::Check-Date "false";" | cat > /etc/apt/apt.conf.d/10no–check-valid-until RUN apt-get update && apt-get install ..
I am completely new to Docker, and am following this tutorial: https://colinfay.me/docker-r-reproducibility/ . Everything appears to build fine, and run fine (after I installed Docker desktop and Ubuntu and some WSL 2 thing), however using volumes does not appear to be working. I can create an image, called "analysis" and confirm (by running R code) ..
I’m trying to create standalone function with carrier::crate in R that could be exported in environment (i.e. a docker container) without the libraries in the original session but with no luck. The example is modified from this blog post. I’m using styler package as an example. I ran in problems with inherited dependencies and probably ..
I am currently thinking about the best way to deploy my RShiny app. After trying to host my app on a dedicated server via Shinyproxy, Docker and Nginx – but this solution was (surprise!) not really scalable. The RAM requirement per user was too high for that. I’m currently considering hosting the app via a ..
I am currently trying to host my RShiny app and am running into a problem: "Warning: Error in magick_image_readpath: R: unable to open image ’02-Backrounds/1F602.png’ No such file or directory @ error/blob.c/OpenBlob/2924" The Magick page tells me that it can’t find the specified directory – spelled correctly, of course. I have of course tried various ..
i am currently working on deploying an R application via a CI/CD pipeline. Right now i have an DockerfileBase, which builds to an image containing all the R libraries needed for the project. Now i want to somehow integrate the functionality that somehow it is detected when a library is added to the DockerfileBase and ..
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