I am looking for suggestions, I would like to share my Jupyter Notebook/Lab analysis with not technical people inside my organisation, ideally I would like to share only the output and not the code, for example through Voila. I am also planning to update the analysis daily, therefore I would like to avoid updating manually ..
Trying to add packages to jupyter docker image jupyter/pyspark-notebook from requirements.txt. During docker build it appears packages are installed. Try to import azure blob package in notebook in jupyter and get error package cannot be found. When running conda list from cmd line in jupyter package not in list? Dockerfile FROM jupyter/pyspark-notebook:latest COPY packages packages ..
This is the way how to setup a custom JupyterHub Environment "oracle-minimal", under adaption of the Dockerfile from here https://github.com/jupyter/docker-stacks/blob/master/minimal-notebook/Dockerfile, to use an ORACLE Wallet to connect to an ORACLE DB. Create the following files… Dockerfile (Location: C:oracle_minimal; UNIX (LF); UTF-8): # Copyright (c) Jupyter Development Team. # Distributed under the terms of the Modified ..
I’m setting up a Jupyter notebook at the docker. I purchased the domain and completed the installation of the SSL certificate with "certbot". So I set up the Jupyter notebook with the key that Certbot created as follows. #this is .jupyter/jupyter_notebook_config.py file c.NotebookApp.certfile = ‘/home/jovyan/ssl/cert.pem’ c.NotebookApp.keyfile = ‘/home/jovyan/ssl/privkey.pem’ #This is the whole setup. When i ..
I downloaded a docker image for cadquery and jupyter notebook. When i run the container, it gave me this message: [I 19:48:59.700 LabApp] JupyterLab application directory is /opt/conda/envs/cq/share/jupyter/lab [I 19:48:59.703 LabApp] Serving notebooks from local directory: /home/cq [I 19:48:59.703 LabApp] Jupyter Notebook 6.1.1 is running at: [I 19:48:59.703 LabApp] http://58bb309866f3:8888/ [I 19:48:59.703 LabApp] Use Control-C ..
We have JupyterHub running with DockerSpawner, so each user gets their own container with a JupyterLab. I found out the best practise is to keep the containers stopped and dont delete them, when the user’s server is stopped. So, we would use c.DockerSpawner.remove = False in our JH config. We are worried about the containers ..
We have JupyterHub running with DockerSpawner, so each user gets their own container with a JupyterLab. I found out the best practice is to keep the containers stopped and dont delete them, when the user’s server is stopped. So, we would reuse them c.DockerSpawner.remove = False in our JH config. We are worried about the ..
I am trying to fix two vulnerabilities related to npm packages, specifically in the image jupyterhub/k8s-singleuser-sample:0.11.1 This image has the package "vega" with version 5.15.0 that has the vulnerability https://nvd.nist.gov/vuln/detail/CVE-2020-26296 (version 5.17.3 fixes this) and the package "ini" with version 1.3.5 that has the vulnerability https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2020-7788 (version 1.3.6 fixes this) I am not very familiar ..
I have a jupyter notebook that is automating some data extraction, and I need to run that data past a parser living inside docker. My code is the following: bnab_inp = "/data/bnab/" bnab_out = ‘.fasta -o "/data/bnab/igblast"’ for item in bNAb: exe = str(activate_docker+bnab_inp+item+bnab_out) os.system(exe) bNAb is a dictionary that contains all the filenames to ..
I’m running docker with docker run -it -p 8888:8888 jupyter/pyspark-notebook /usr/local/bin/start-notebook.sh: running hooks in /usr/local/bin/before-notebook.d /usr/local/bin/start-notebook.sh: running /usr/local/bin/before-notebook.d/spark-config.sh /usr/local/bin/start-notebook.sh: done running hooks in /usr/local/bin/before-notebook.d Executing the command: jupyter notebook [I 12:52:25.086 NotebookApp] Writing notebook server cookie secret to /home/jovyan/.local/share/jupyter/runtime/notebook_cookie_secret [I 12:52:26.010 NotebookApp] JupyterLab extension loaded from /opt/conda/lib/python3.8/site-packages/jupyterlab [I 12:52:26.010 NotebookApp] JupyterLab application directory is /opt/conda/share/jupyter/lab ..